Extension:External Data

The External Data extension allows MediaWiki pages to retrieve, filter, and format structured data from one or more sources. These sources can include external URLs, regular wiki pages, uploaded files, files on the local server, databases or LDAP directories.

Parser functions
The extension has nine parser functions:
 * #get_web_data retrieves CSV, GFF, JSON or XML data from a URL and assigns it to variables that can be accessed on the page.
 * #get_soap_data retrieves data from a URL via the SOAP protocol.
 * #get_file_data retrieves data from a file on the local server, in the same formats as #get_web_data.
 * #get_db_data retrieves data from a database.
 * #get_ldap_data retrieves data from an LDAP server.
 * #external_value displays the value of any such variable.
 * #for_external_table cycles through all the values retrieved for a set of variables, displaying the same "container" text for each one.
 * #store_external_table cycles through a table of values, storing them as semantic data via the Semantic MediaWiki extension. The storage used depends on SMW's storage system: if it uses SQLStore3, #store_external_table mimics a call to SMW's #subobject function for each row, while if SMW uses SQLStore2, it mimics a call to the #set_internal function, defined in the Semantic Internal Objects extension - so in that case, Semantic Internal Objects must be installed for this function to work.
 * #display_external_table cycles through all the values retrieved for a set of variables, displaying each "row" using a template.
 * #clear_external_data erases the current set of retrieved data.

Download
You can download the External Data code, in .zip format, here.

You can also download the code directly via Git from the MediaWiki source code repository. From a command line, you can call the following:

You can also view the code online here.

Installation
To install this extension, create an 'ExternalData' directory (either by extracting a compressed file or downloading via Git), and place this directory within the main MediaWiki 'extensions' directory. Then, in the file 'LocalSettings.php', add the following line:

Authors
External Data was created, and is maintained, by Yaron Koren (reachable at yaron57@gmail.com). The overall code base, though, is the work of many people; important code contributions were made by Michael Dale, David Macdonald, Siebrand Mazeland, Ryan Lane, Chris Wolcott, Jelle Scholtalbers, Kostis Anagnostopoulos, Nick Lindridge, Dan Bolser, Joel Natividad and Scott Linder.

Development of some features was funded by KeyGene and KDZ – Zentrum für Verwaltungsforschung.

Retrieving data
Data can be retrieved from three different sources: from a web page containing structured data (including a page on the wiki itself), from a database, and from an LDAP server.

#get_web_data - CSV, GFF, JSON, XML
To get data from a web page that holds structured data, call the parser function #get_web_data. It can take the following syntax:

An explanation of the parameters:
 * url= sets the full URL of the CSV, GFF, JSON or XML file. (CSV, JSON and XML are standard data formats; GFF, or the Generic Feature Format, is a format for genomic data.)
 * format= specifies the format of the data being retrieved: it should be one of either 'CSV', 'CSV with header', 'GFF', 'JSON' or 'XML'. The difference between 'CSV' and 'CSV with header' is that 'CSV' is simply a set of lines with values; while in 'CSV with header', the first line is a "header", holding a comma-separated list of the name of each column.
 * delimiter specifies the delimiter between values in the data set; it is used only for the CSV formats. The default value is ",".
 * data= holds the "mappings" that connect local variable names to external variable names. Each mapping (of the form [local_variable_name1]=[external_variable_name1]) is separated by a comma. External variable names are the names of the values in the file (in the case of a header-less CSV file, the names are simply the indexes of the values: 1, 2, 3, etc.), and local variable names are the names that are later passed in to #external_value.
 * filters= sets filtering on the set of rows being returned. You can set any number of filters, separated by commas; each filter sets a specific value for a specific external variable. It is not necessary to use any filters; most APIs, it is expected, will provide their own filtering ability through the URL's query string.
 * use xpath is an optional parameter that can be used with the "XML" format, to indicate that "data" mappings should be done using XPath notation; see Using XPath, below.
 * post data= is an optional parameter that lets you send some set of data to the URL via POST, instead of via the query string.
 * cache seconds= is an optional parameter that sets the number of seconds that the values from this call should be cached; it overrides the value of $edgCacheExpireTime, if there is any.

More than one #get_web_data call can be used in a page. If this happens, though, make sure that every local variable name is unique.

For data from XML sources, the variable names are determined by both tag and attribute names. For example, given the following XML text:
 * <fruit type="Apple"> red

the variable type would have the value Apple, and the variable color would have the value red.

Similarly, the following XML text would be interpreted as a table of values defining two variables named type and color:
 * <fruit type="Apple"> red
 * <fruit type="Kiwi"> brown
 * <fruit type="Kiwi"> brown

A CSV file must be literally a CSV file, i.e., delimited by commas. A call for a headerless CSV file might look:

while a call to CSV with a header row might look like:

where the header contains 'FirstName', which is retrieved as 'first name' in the wiki.

You can also set caching to be done on the data retrieved, and string replacement to hide API keys; see the "Usage" section, below, for how to do both of those.

Getting data from a non-API text file
If the data you wish to access is on a MediaWiki page or in an uploaded file, you can use the above methods to retrieve the data assuming the page or file only contains data in one of the supported formats:
 * for data on a wiki page, use "&action=raw" as part of the URL;
 * for data in an uploaded file, use the full path.

If the MediaWiki page with the data is on the same wiki, it is best to use the fullurl: parser function, e.g.

Similarly, for uploaded files, you can use the filepath: function, e.g.

For wiki pages that have additional information, the External Data extension provides a way to create an API of your own, at least for CSV data. To get this working, first place the data you want accessed in its own wiki page, in CSV format, with the headers as the top row of data (see here for an example). Then, the special page 'GetData' will provide an "instant API" for accessing either certain rows of that data, or the entire table. By adding "field-name=value" to the URL, you can limit the set of rows returned.

A URL for the 'GetData' page can then be used in a call to #get_web_data, just as any other data URL would be; the data will be returned as a CSV file with a header row, so the 'format' parameter of #get_web_data should be set to 'CSV with header'. See here for an example of such data being retrieved and displayed using #get_web_data and #for_external_table. In this way, you can use any table-based data within your wiki without the need for custom programming.

Data caching
You can configure External Data to cache the data contained in the URLs that it accesses, both to speed up retrieval of values and to reduce the load on the system whose data is being accessed. To do this, you can run the SQL contained in the extension file 'ExternalData.sql' in your database, which will create the table 'ed_url_cache', then add the following to your LocalSettings.php file, after the inclusion of External Data:

You should also add a line like the following, to set the expiration time of the cache, in seconds; this example line will cache the data for a week:

String replacement in URLs
One or more of the URLs you use may contain a string that you would prefer to keep secret, like an API key. If that's the case, you can use the array $edgStringReplacements to specify a dummy string you can use in its place. For instance, let's say you want to access the URL "http://worlddata.com/api?country=Guatemala&key=123abcd", but you don't want anyone to know your API key. You can add the following to your LocalSettings.php file, after the inclusion of ExternalData:

Then, in your call to #get_web_data, you can replace the real URL with: "http://worlddata.com/api?country=Guatemala&key=WORLDDATA_KEY".

Whitelist for URLs
You can create a "whitelist" for URLs accessed by #get_web_data: in other words, a list of domains, that only URLs from those domains can be accessed. If you are using string replacements in order to hide secret keys, it is highly recommended that you create such a whitelist, in order to prevent users from finding out those keys by including them in a URL within a domain that they control.

To create a whitelist with one domain, add the following to LocalSettings.php:

To create a whitelist with multiple domains, add something like the following instead:

Security
By default, #get_web_data allows for HTTPS-based wikis to access plain HTTP URLs, and vice versa, without the need for certificates (see Transport Layer Security on Wikipedia for a full explanation). If you want to require the presence of a certificate, add the following to LocalSettings.php, below the inclusion of External Data:

Using XPath
In some cases, the same tag or attribute name can be used more than once in an XML file, and you only want to get a specific instance of it. You can do that using the XPath notation. To do it, you just need to add the parameter "use xpath", and then have each "external variable name" in the "data=" parameter be in XPath notation, instead of just a simple name.

We won't get into the details of XPath notation here, but you can see a demonstration of "use xpath" here.

Note that, when using XPath, any specific call to #external_value seems to only work once on a page. If you need to display a specific value more than once, you can use the Variables extension to store that value and then retrieve it again later in the page.

#get_soap_data - web data via SOAP
The parser function #get_soap_data, similarly to #get_web_data, lets you get data from a URL, but here using the SOAP protocol. It is called in the following way:

All of the LocalSettings.php settings that can be applied for #get_web_data can also be applied for #get_soap_data: $edgCacheTable, $edgCacheExpireTime, $edgStringReplacements, $edgAllowExternalDataFrom and $edgAllowSSL.

#get_file_data - retrieve files on the local server
You can get data from a file on the server on which the wiki resides, using #get_file_data. This parser function is called in a similar manner to #get_web_data - the set of allowed formats is the same, as are most of the other parameters. Unlike with #get_web_data, however, you cannot retrieve the data from any file; rather, the set of allowed files, and/or directories, must be set beforehand in LocalSettings.php, with an alias for each one, so that the actual file paths remain private. It is called in the following way:

Either "file=", or the combination of "directory=" and "file name=", should be set, but not both. If you want to give the wiki access to one or a small number of files, you could add one or more lines like the following to LocalSettings.php:

You would then set "file=" to the ID for that file.

And if there are any directories that you want the wiki to be able to access all files from, you could add one or more lines like the following to LocalSettings.php:

You would then set "directory=" to the ID of that directory, and "file name=" to the name of the file you want to access in this #get_file_data call. Note that the External Data code ensures that users cannot do tricks like adding "../.." and so on to the file name to access directories outside of the specified one.

#get_db_data - retrieve data from a database
The parser function #get_db_data allows retrieval of data from external databases. This function executes a simple SELECT statement and assigns the results to local variables that can then be used with the #external_value or #for_external_table functions.

A note about security: - If you are going to use #get_db_data you should think about the security implications. Configuring a database in LocalSettings.php will allow anyone with edit access to your wiki to run SQL select statements against that database. You should use a database user that has the minimum permissions for what you are trying to achieve. It is possible that complex SQL constructions could be passed to this function to cause it to do things vastly different from what it was designed for.

Configuration
Each database being accessed needs to be configured separately in LocalSettings.php. For normal databases (i.e., everything except for SQLite), add the following stanza for each database:

Where:


 * ID is a label for this database which is used when calling #get_db_data
 * server URL is the hostname on which the database lives
 * DB type is the type of database, i.e. mysql, postgres, mssql, oracle, sqlite, db2 or mongodb
 * DB name, username and password are details for accessing the database.

An example of a set of values would be:

The following optional settings can also be added:

Example values for these variables are:

Support for database systems
MySQL, Postgres (i.e. PostgreSQL), DB2 and MongoDB should work fully by default (though there are syntax limitations, and differences, for MongoDB - see below). For MS SQL/SQLServer, SQLite and Oracle, you may need to perform some special handling.

Install the PostgreSQL database module (php-pgsql) for PHP if it's not present on your system. On a machine connected to the Redhat Software Collection repo the command would be: yum install php55-php-pgsql Restart the webserver.
 * Postgres


 * MS SQL/SQLServer

For Microsoft SQLServer, if it doesn't work by default, there are three options that may help: ...and replace them with:
 * If the wiki is running on Windows, you can install Microsoft drivers for PHP for SQL Server. See instructions here.
 * If the wiki is running on Linux, the MSSQLBackCompat or OdbcDatabase extensions may help.
 * For MSSQLBackCompat, you will need to specify "mssqlold" (not "mssql") as the database type.
 * For OdbcDatabase, you will need to specify "odbc" (not "mssql") as the database type.
 * If you get messages at the top that look like, "Warning: Invalid argument supplied for foreach in ...\includes\db\DatabaseMssql.php", this code change might help: in the MediaWiki file includes/db/DatabaseMssql.php, look for lines that look like:

To connect to SQLite, you need something like the following in LocalSettings.php:
 * SQLite

Connecting to Oracle may work by default. If it doesn't work, the following may help:
 * Oracle
 * Make sure that the Oracle client, and the PHP version being used, are using the same architecture: they have to either both be 32-bit, or both be 64-bit.
 * Make sure that the value of $edgDBServer for the installation matches something in the corresponding Oracle client .ora files. The value may need to look like "serverName/dbName", as opposed to "serverName".
 * If none of the above are the issue, you could try using the OdbcDatabase extension, which should work as well.

For MongoDB, there are no special connection parameters, although the username and password may be optional.
 * MongoDB

Usage
To get data from an external database, call the following:

An explanation of the fields:


 * db - the identifying label configured in LocalSettings.php (this parameter used to be known as "server")
 * from - an SQL from clause
 * where - an SQL where clause (optional)
 * limit - a number, limiting the number of results (optional)
 * order by - an SQL "order by" clause (optional)
 * data - mapping of database column names to local variables (syntax: localVariable=databaseColumn - i.e. "strName" is the name of the database column in the example below).

An example call, using the "employee database" example from above:

MongoDB
MongoDB is a non-SQL (or "NoSQL", if you prefer) database system, with its own querying language. When accessing MongoDB, you can either pass in a standard MongoDB query, or use the standard SQL-like syntax of #get_db_data. To use standard MongoDB querying, pass in the query to the parameter "find query=".

You can also use the standard querying functionality. There are some restrictions and differences, however, for the "where" clause:
 * only "AND"s can be used, not "OR"s
 * for the "LIKE" comparison, no text should be placed around the comparator - it should look like "Username LIKE Jo", not "Username LIKE '%Jo%'".

Because MongoDB returns values in JSON that may be complex, and contain compound values, you can get data that is stored in such a way by separating field names with dots. For instance, if the return data contains a value for a field called "Measurements" that is an array, holding values for fields called "Height" and "Width", then the "data=" parameter to #get_web_data could have a value like "height=Measurements.Height,width=Measurements.Width".

You can do Memcached-based caching of values retrieved from MongoDB; to do that, you need the following two lines in LocalSettings.php:

#get_ldap_data - retrieve data from LDAP directory
The parser function #get_ldap_data allows retrieval of data from external LDAP directories. This function executes LDAP queries and assigns the results to local variables that can then be used with the #external_value function. It currently only handles a single row of results, and so is most appropriate for querying directories for data about individual users.

A note about security: - If you are going to use #get_ldap_data you should think hard about the security implications. Configuring an LDAP server in LocalSettings.php will allow anyone with edit access to your wiki to run queries against that server. You should use a domain user that has the minimum permissions for what you are trying to achieve. Wiki users could run queries to extract all sorts of information about your domain. You should know what you are doing before enabling this function.

Configuration
You need to configure each LDAP server in LocalSettings.php. Add the following stanza for each server:

Where:


 * domain is a label to be used when calling #get_ldap_data
 * myDomainuser and myDomainPassword are credentials used to bind to the LDAP server
 * [basedn] is the base DN used for the search.

Example:

Usage
To query the LDAP server add this call to a wiki page:

Where:


 * domain is the label used in LocalSettings.php
 * filter is the ldap filter used for the search
 * data is the mappings of LDAP attributes to local variables

An example that retrieves a user from with Win2003/AD, using a userid passed to a template:

Note that #get_ldap_data will only retrieve one result.

Displaying data
Once you have retrieved the data onto the page, from any source, there are two ways to display it on the page: #external_value and #for_external_table.

Displaying individual values
If this call retrieved a single value for each variable specified, you can call the following:

As an example, this page contains the following text:

.
 * Germany borders the following countries and bodies of water:
 * Germany has population.

The page gets data from a URL at semanticweb.org, generated by the Semantic MediaWiki extension. That URL contains the following text:

Germany,"North Sea,Denmark,Baltic Sea,Poland,Czech Republic,Austria,Switzerland,France,Luxembourg,Belgium,Netherlands","82,411,000",3.5705e+11 m²

The page then uses #external_value to display the 'bordered countries' and 'population' values; although it uses the #arraymap function, defined by the Semantic Forms extension, to apply some transformations to the 'bordered countries' value (you can ignore this detail if you want).

By default, #external_value displays an error message if it is called for a variable that has not been set. You can disable that by adding the following to LocalSettings.php:

Displaying a table of values
The data returned by #get_web_data or #get_db_data (#get_ldap_data doesn't support this feature) can also be a "table" of data (many values per field), instead of just a single "row" (one value per field). In this case, you can display it using one of either the functions #for_external_table or #display_external_table.

#for_external_table
This URL at semanticweb.org contains information similar to that above, but for all the countries in Africa instead of just one country. Calling #get_web_data with this URL, with the same format as above, will set the local variables to contain arrays of data, rather than single values. You can then call #for_external_table, which has the following format:

...where "expression" is a string that contains one or more variable names, surrounded by triple brackets. This string is then displayed for each retrieved "row" of data.

For an example, this page contains a call to #get_web_data for the semanticweb.org URL mentioned above, followed by this call:

The call to #for_external_table holds a single row of a table, in wiki-text; it's surrounded by wiki-text to create the top and bottom of the table. The presence of " | " is a standard MediaWiki trick to display pipes from within parser functions; to get it to work, you just have to create a page called "Template:!" that contains a single pipe. There are much easier calls to #for_external_table that can be made, if you just want to display a line of text per data "row", but an HTML table is the standard approach.

There's one other interesting feature of #for_external_table, which is that it lets you modify specific values. You can URL-encode values by calling them with instead of just , and similarly you can HTML-encode values by calling them with.

As an example of the former, if you wanted to show links to Google searches on a set of terms retrieved, you could call:

This is required because standard parser functions can't be used within #for_external_table - so the following, for example, will not work:

#display_external_table

 * 1) display_external_table is similar in concept to #for_external_table, but it passes the values in each row to a template, which handles the display. This function is called as:

An explanation of the parameters:
 * template</tt> - the name of the template into which each "row" of data will be passed
 * data</tt> - the data mappings between external variable and local template parameter; much like the data</tt> parameters for the other functions
 * delimiter</tt> - the separator used between one template call and the next; default is a newline. (To include newlines in the delimiter value, use "\n".)

For example, to display the data from the previous example in a table as before, you could create a template called "Country info row", that had the parameters "Country name", "Countries bordered", "Population" and "Area", and then call the following:

The template should then contain wikitext like the following:

Clearing data
You can also clear all external data that has already been retrieved, so that it doesn't conflict with calls to retrieve external data further down the page. The most likely case in which this is useful is when data is retrieved and displayed in a template that is called more than once on a page. To clear the data, just call " ". Note that the ":" has to be there at the end of the call, or else MediaWiki will ignore the parser function.

There is no way to clear the values for only one field; #clear_external_data erases the entire set of data.

Storing data
You can also use External Data to store a table of data that has been retrieved; you can do this using the storage capabilities of either the Semantic MediaWiki or Cargo extensions. Once the data has been stored, it can then be queried, aggregated, displayed etc. on the wiki by that extension.

Semantic MediaWiki
If you store data with Semantic MediaWiki, you should note a common problem, which is that the data stored by SMW does not get automatically updated when the data coming from the external source changes. The best solution for this, assuming you expect the data to change over time, is to create a cron job to call the SMW maintenance script "SMW_refreshData.php" at regular intervals, such as once a day; that way, the data is never more than a day old.

To store a table of data using SMW, you can use the #store_external_table function. This function works as a hybrid of the #for_external_table function and one of either the #subobject function (defined in the Semantic MediaWiki extension) or the #set_internal function (defined in the Semantic Internal Objects extension). The function used depends on whether Semantic MediaWiki uses SQLStore2 or SQLStore3; if SQLStore2 is used, #set_internal is used, so Semantic Internal Objects must be installed. The syntax of #store_external_table is very similar to the syntax of #set_internal (see the Semantic Internal Objects page for documentation), but it loops over each row, and uses variables, in the same way as #for_external_table. You can see a demonstration of this function on the page Fruits semantic data; the call to #store_external_table on that page looks like:

Cargo
There is no special parser function for storing data via Cargo; instead you should simply use #display_external_table, and include Cargo storage code within the template called by that function. You can see an example of Cargo-based storage using #display_external_table here; it uses this template, and you can see the resulting data here.

Common problems

 * If the call to #get_web_data or #for_external_table isn't returning any data, and the page being accessed is large, it could be because the call to retrieve is getting timed out. You should set the $wgHTTPTimeout flag in your LocalSettings.php file (which represents a number of seconds) to some number greater than 3, its default value. You could call, for instance:




 * If the data being accessed has changed, but the wiki page accessing it still shows the old data, it is because that page is being cached by MediaWiki. There are several solutions to this: if you are an administrator, you can hit the "refresh" tab above the page, which will purge the cache. You can also easily disable caching for the entire wiki; see here for how. Finally, if you wait long enough (typically no more than 24 hours), the page will get refreshed on its own and display the new data.

Version history
External Data is currently at version 1.8.1. See the entire version history.

Bugs and feature requests
You can use either of these mailing lists for any questions, suggestions or bug reports about External Data:


 * The Semantic MediaWiki mailing list, semediawiki-user
 * The main MediaWiki mailing list, mediawiki-l.

With either mailing list, please add "[ED]" at the beginning of the subject line, to clarify the subject matter.

(Although the External Data extension in general is independent of Semantic MediaWiki, the fact that the two extensions are often used together means that External Data can be considered part of the Semantic MediaWiki "family" for communication purposes.)

You can also send specific code patches to Yaron Koren, at yaron57@gmail.com.

Translating
Translation of External Data is done through translatewiki.net. The translation for this extension can be found here. To add language values or change existing ones, you should create an account on translatewiki.net, then request permission from the administrators to translate a certain language or languages on this page (this is a very simple process). Once you have permission for a given language, you can log in and add or edit whatever messages you want to in that language.